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Naslov:Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones
Avtorji:ID Wragg, David (Avtor)
ID Eynard, Sonia E. (Avtor)
ID Basso, Benjamin (Avtor)
ID Canale-Tabet, Kamila (Avtor)
ID Labarthe, Emmanuelle (Avtor)
ID Bouchez, Olivier (Avtor)
ID Bienefeld, Kaspar (Avtor)
ID Bieńkowska, Małgorzata (Avtor)
ID Costa, Cecilia (Avtor)
ID Gregorc, Aleš (Avtor)
ID Kryger, Per (Avtor)
ID Parejo, Melanie (Avtor)
ID Pinto, Alice M. (Avtor)
ID Bidanel, Jean-Pierre (Avtor)
ID Servin, Bertrand (Avtor)
ID Le Conte, Yves (Avtor)
ID Vignal, Alain (Avtor)
Datoteke:.pdf Wragg-2022-Complex_population_structure_and_ha.pdf (3,07 MB)
MD5: 518EBBA27ED552C57776AD337CBEAE76
 
URL https://doi.org/10.1111/1755-0998.13665
 
Jezik:Angleški jezik
Vrsta gradiva:Znanstveno delo
Tipologija:1.01 - Izvirni znanstveni članek
Organizacija:FKBV - Fakulteta za kmetijstvo in biosistemske vede
Opis:Honey bee subspecies originate from specific geographical areas in Africa, Europe and the Middle East, and beekeepers interested in specific phenotypes have imported genetic material to regions outside of the bees' original range for use either in pure lines or controlled crosses. Moreover, imported drones are present in the environment and mate naturally with queens from the local subspecies. The resulting admixture complicates population genetics analyses, and population stratification can be a major problem for association studies. To better understand Western European honey bee populations, we produced a whole genome sequence and single nucleotide polymorphism (SNP) genotype data set from 870 haploid drones and demonstrate its utility for the identification of nine genetic backgrounds and various degrees of admixture in a subset of 629 samples. Five backgrounds identified correspond to subspecies, two to isolated populations on islands and two to managed populations. We also highlight several large haplotype blocks, some of which coincide with the position of centromeres. The largest is 3.6 Mb long and represents 21% of chromosome 11, with two major haplotypes corresponding to the two dominant genetic backgrounds identified. This large naturally phased data set is available as a single vcf file that can now serve as a reference for subsequent populations genomics studies in the honey bee, such as (i) selecting individuals of verified homogeneous genetic backgrounds as references, (ii) imputing genotypes from a lower-density data set generated by an SNP-chip or by low-pass sequencing, or (iii) selecting SNPs compatible with the requirements of genotyping chips.
Ključne besede:genome, haplotype, honey bee, population genetics, SNP
Status publikacije:Objavljeno
Verzija publikacije:Objavljena publikacija
Poslano v recenzijo:24.11.2021
Datum sprejetja članka:01.06.2022
Datum objave:11.06.2022
Založnik:Blackwell
Leto izida:2022
Št. strani:Str. 3068-3086
Številčenje:Letn. 22, Št. 8
PID:20.500.12556/DKUM-89405 Novo okno
UDK:575:638.1
COBISS.SI-ID:116901379 Novo okno
DOI:10.1111/1755-0998.13665 Novo okno
ISSN pri članku:1755-098X
Datum objave v DKUM:08.07.2024
Število ogledov:109
Število prenosov:13
Metapodatki:XML DC-XML DC-RDF
Področja:Ostalo
:
WRAGG, David, EYNARD, Sonia E., BASSO, Benjamin, CANALE-TABET, Kamila, LABARTHE, Emmanuelle, BOUCHEZ, Olivier, BIENEFELD, Kaspar, BIEŃKOWSKA, Małgorzata, COSTA, Cecilia, GREGORC, Aleš, KRYGER, Per, PAREJO, Melanie, PINTO, Alice M., BIDANEL, Jean-Pierre, SERVIN, Bertrand, LE CONTE, Yves in VIGNAL, Alain, 2022, Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones. Molecular ecology resources [na spletu]. 2022. Vol. 22, no. Št. 8, p. 3068–3086. [Dostopano 20 januar 2025]. DOI 10.1111/1755-0998.13665. Pridobljeno s: https://dk.um.si/IzpisGradiva.php?lang=slv&id=89405
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Gradivo je del revije

Naslov:Molecular ecology resources
Skrajšan naslov:Mol. ecol. resour.
Založnik:Blackwell
ISSN:1755-098X
COBISS.SI-ID:5711737 Novo okno

Gradivo je financirano iz projekta

Financer:Drugi - Drug financer ali več financerjev
Program financ.:SeqApiPop programme
Številka projekta:14-21-AT
Naslov:Bienvenue sur le site de l’établissement national des produits de l’agriculture et de la mer
Akronim:FranceAgriMer

Financer:Drugi - Drug financer ali več financerjev
Naslov:INRA Animal Genetics division
Akronim:INRA

Licence

Licenca:CC BY 4.0, Creative Commons Priznanje avtorstva 4.0 Mednarodna
Povezava:http://creativecommons.org/licenses/by/4.0/deed.sl
Opis:To je standardna licenca Creative Commons, ki daje uporabnikom največ možnosti za nadaljnjo uporabo dela, pri čemer morajo navesti avtorja.
Začetek licenciranja:11.06.2022

Sekundarni jezik

Jezik:Slovenski jezik
Ključne besede:genom, haplotip, medonosna čebela, populacijska genetika, polimorfizem posameznega nukleotida


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