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Title:Effects of translational and rotational degrees of freedom on the hydration of ionic solutes as seen by the popular water models
Authors:ID Mohorič, Tomaž (Author)
ID Bren, Urban (Author)
ID Vlachy, Vojko (Author)
Files:.pdf Acta_Chimica_Slovenica_2015_Mohoric,_Bren,_Vachyl_Effects_of_Translational_and_Rotational_Degrees_of_Freedom_on_the_Hydration_of_Ionic_S.pdf (494,01 KB)
MD5: 5A920F5288C813C0EC51DD8FE22BD8F8
PID: 20.500.12556/dkum/3db7cc2d-5461-4694-bdd9-9abb928267c5
 
URL https://journals.matheo.si/index.php/ACSi/article/view/1291
 
Language:English
Work type:Scientific work
Typology:1.01 - Original Scientific Article
Organization:FKKT - Faculty of Chemistry and Chemical Engineering
Abstract:We employed molecular dynamics simulations with separate thermostats for translational and rotational temperatures in order to study the effects of these degrees of freedom on the hydration of ions. In this work we examine how water models, differing in charge distribution, respond to the rise of rotational temperature. The study shows that, with respect to the distribution of negative charge, popular water models lead to different responses upon an increase of the rotational temperature. The differences arise in hydration of cations, as the negative charge distribution on the model solvent represents the determining factor in such cases. The cation-water correlation increases with the increasing rotational temperature if negative charge is placed in (or close to) the centre of the water molecule (a typical example is the SPC water model) and decreases, when the negative charge is shifted from the centre (as in the TIP5P model of water). Because all the water models examined here have similar distributions of positive charge, they all exhibit similar trends in solvation of anions. In contrast to above, the effect of translational temperature variation is similar for all water-solute pairs; any increase in translational temperature decreases the solute-water correlations.
Keywords:ionic hydration, water models, degrees of freedom, molecular dynamics
Publication status:Published
Publication version:Version of Record
Year of publishing:2015
Number of pages:str. 489-497
Numbering:Letn. 62, št. 3
PID:20.500.12556/DKUM-67450 New window
ISSN:1318-0207
UDC:544.27
ISSN on article:1318-0207
COBISS.SI-ID:1536357059 New window
DOI:10.17344/acsi.2014.1291 New window
NUK URN:URN:SI:UM:DK:DSK0XEVD
Publication date in DKUM:18.08.2017
Views:1668
Downloads:356
Metadata:XML DC-XML DC-RDF
Categories:Misc.
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Record is a part of a journal

Title:Acta Chimica Slovenica
Shortened title:Acta Chim. Slov.
Publisher:Slovensko kemijsko društvo
ISSN:1318-0207
COBISS.SI-ID:14086149 New window

Document is financed by a project

Funder:ARRS - Slovenian Research Agency
Project number:J1-4148
Name:Solvatacija in vpliv narave ionov v bioloških sistemih

Licences

License:CC BY 4.0, Creative Commons Attribution 4.0 International
Link:http://creativecommons.org/licenses/by/4.0/
Description:This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.
Licensing start date:18.08.2017

Secondary language

Language:Slovenian
Abstract:S pomočjo simulacije gibanja molekul v sistemu, kjer smo posameznim prostostnim stopnjam (translacija, rotacija) predpisali različne temperature, smo raziskali vpliv teh prostostnih stopenj na hidratacijo enostavnih ionov. Zanimalo nas je, kako se, glede na izbrani model vode, hidratacija enostavnih ionov odziva na povišanje rotacijske temperature. Pokazali smo, da se modeli vode, skladno s porazdelitvijo negativnega naboja na molekuli, ločijo v dve skupini. Do različnega odziva zato prihaja predvsem pri hidrataciji kationa. Za 3- in 4-točkovne modele vode (npr. SPC model), kjer je negativni naboj v središču molekule vode, hidratacija kationov z naraščujočo temperaturo rotacije narašča. V nasprotju s tem pa pri 5-točkovnih modelih vode (npr. TIP5P), hidratacija kationov z višanjem temperature rotacije slabi. Pri vseh obravnavanih modelih vode se hidratacija anionov zmanjšuje s povišanjem rotacijske temperature. Razlog je podobna porazdelitev pozitivnega naboja pri vseh modelih vode. Vpliv translacijske temperature je pri vseh topljencih in za vse modele vode kvalitativno enak – vsako povišanje temperature slabi korelacijo med topljencem in vodo.
Keywords:fizikalna kemija, hidratacija ionov, voda, modeli vode, prostostne stopnje, molekularna dinamika


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