1. Diversity analysis of adult Chironomidae in the Lake Victoria basin of KenyaOdhiambo Walter Otieno, Reuben Oyoo Mosi, Peter Bulli, 2023, izvirni znanstveni članek Opis: Chironomidae commonly inhabits most aquatic habitats and often dominate aquatic insect communities in abundance and species richness. Despite their ecological importance, the diversity and distribution of chironomids in the Lake Victoria ecosystem of Kenya have not been studied to date. Here we report on the diversity and distribution of adult Chironomidae in Usenge, Mbita and Ogal beaches of the Lake Victoria ecosystem in Kenya using morphological features and sequence data of Cytochrome c oxidase subunit I (COI) gene. Wing venation-based microscopic characterization identified four genera, Tanypus, Coelotanypus, Dicrotendipes and Chironomus. The COI gene barcoding further revealed several species, including Kiefferulus brevibucca, Chironomus flaviplumus, Polypedilum fuscovittatum, Polypedilum sp. and Dicrotendipes sp. The identified species were grouped into three clusters based on neighbor-joining phylogenetic approach. Differences in species richness were observed among the three study sites, with Mbita exhibiting the highest species richness. The evolutionary analysis revealed relatedness among all the identified species, suggesting a shared recent common ancestor. Unlike previous studies, this study represents the
first report on detailed characterization of Chironomidae in the Lake Victoria ecosystem of Kenya. Moreover, this study serves as a first step towards a comprehensive understanding of the range of species of Chironomidae inhabiting this ecosystem. Ključne besede: Chironomidae, cytochrome c oxidase subunit I, DNA barcording, wing venation, diversity Objavljeno v DKUM: 23.04.2025; Ogledov: 0; Prenosov: 0
Povezava na datoteko |
2. Determinants of diarrhea, phenotypic and genomic characterization of Escherichia coli isolates from diarrheic and non-diarrheic patients attending public primary health facilities in Addis Ababa and Hossana, Ethiopia : dissertationWolde Deneke, 2025, doktorska disertacija Ključne besede: dissertations, Escherichia coli, antimicrobial resistance, genetic diversity, antimicrobial resistance genes, virulence-associated genes, mobile genetic elements, phylogenetic groups, whole-genome sequencing Objavljeno v DKUM: 10.04.2025; Ogledov: 0; Prenosov: 7
Celotno besedilo (3,39 MB) |
3. Conservation of forest genetic resources with forest reproductive material management guidelinesHojka Kraigher, 2025 Opis: The textbook is intended for students and professionals in the field of conservation of biotic diversity with an emphasis on the conservation of genetic diversity, silviculturers and forest seed dealers and responsible in forest nurseries. It includes the basics of forest genetics, presents the importance and theoretical basis for the conservation of forest genetic resources, the Strategy for conservation of forest genetic resources in Europe, EUFORGEN and SIFORGEN programs (Slovenian program for the conservation of forest genetic resources). Botanical rpesentations of seed structure and germination physiology. Technologies of collection, processing and storage, and germination of seeds of forest tree species. Basics of seedlings production in forest nurseries. European and Slovenian legislation in the field of forest reproductive material. Examples of documents used in the approval of forest seed objects (basic material) and certification of forest reproductive material. Ključne besede: genetic diversity, legislation, certification, forest reproductive mterial, conservation of forets genetic resources Objavljeno v DKUM: 31.01.2025; Ogledov: 0; Prenosov: 4
Celotno besedilo (5,02 MB) Gradivo ima več datotek! Več... |
4. Novel Siphoviridae Bacteriophages infecting Bacteroides uniformis contain diversity generating retroelementStina Hedžet, Maja Rupnik, Tomaž Accetto, 2021, izvirni znanstveni članek Opis: Intestinal phages are abundant and important components of gut microbiota, yet the isolated and characterized representatives that infect abundant gut bacteria are sparse. Here we describe the isolation of human intestinal phages infecting Bacteroides uniformis. Bacteroides is one of the most common bacterial groups in the global human gut microbiota; however, to date not many Bacteroides specific phages are known. Phages isolated in this study belong to a novel viral genus, Bacuni, within the Siphoviridae family. Their genomes encode diversity-generating retroelements (DGR), which were shown in other bacteriophages to promote phage adaptation to rapidly changing environmental conditions and to broaden their host range. Three isolated phages showed 99.83% genome identity but one of them infected a distinct B. uniformis strain. The tropism of Bacuni phages appeared to be dependent on the interplay of DGR mediated sequence variations of gene encoding putative phage fimbrial tip proteins and mutations in host genes coding for outer-membrane proteins. We found prophages with up to 85% amino acid similarity over two-thirds of the Bacuni phage genome in the B. acidifaciens and Prevotella sp. genomes. Despite the abundance of Bacteroides within the human microbiome, we found Bacuni phages only in a limited subset of published gut metagenomes. Ključne besede: gut, Bacteroides, virome, prophage, diversity-generating retroelement, uniformis, Siphoviridae Objavljeno v DKUM: 19.08.2024; Ogledov: 64; Prenosov: 10
Celotno besedilo (2,30 MB) Gradivo ima več datotek! Več... |
5. Benchmarking plant diversity of Palaearctic grasslands and other open habitatsIdoia Biurrun, Remigiusz Pielech, Iwona Dembicz, François Gillet, Łukasz Kozub, Corrado Marcenò, Triin Reitalu, Koenraad Van Meerbeek, Riccardo Guarino, Milan Chytrý, Nataša Pipenbaher, Sonja Škornik, 2021, izvirni znanstveni članek Opis: Aims: Understanding fine-grain diversity patterns across large spatial extents is fundamental for macroecological research and biodiversity conservation. Using the GrassPlot database, we provide benchmarks of fine-grain richness values of Palaearctic open habitats for vascular plants, bryophytes, lichens and complete vegetation (i.e., the sum of the former three groups).
Location: Palaearctic biogeographic realm.
Methods: We used 126,524 plots of eight standard grain sizes from the GrassPlot database: 0.0001, 0.001, 0.01, 0.1, 1, 10, 100 and 1,000 m2 and calculated the mean richness and standard deviations, as well as maximum, minimum, median, and first and third quartiles for each combination of grain size, taxonomic group, biome, region, vegetation type and phytosociological class.
Results: Patterns of plant diversity in vegetation types and biomes differ across grain sizes and taxonomic groups. Overall, secondary (mostly semi-natural) grasslands and natural grasslands are the richest vegetation type. The open-access file ”GrassPlot Diversity Benchmarks” and the web tool “GrassPlot Diversity Explorer” are now available online (https://edgg.org/databases/GrasslandDiversityExplorer) and provide more insights into species richness patterns in the Palaearctic open habitats.
Conclusions: The GrassPlot Diversity Benchmarks provide high-quality data on species richness in open habitat types across the Palaearctic. These benchmark data can be used in vegetation ecology, macroecology, biodiversity conservation and data quality checking. While the amount of data in the underlying GrassPlot database and their spatial coverage are smaller than in other extensive vegetation-plot databases, species recordings in GrassPlot are on average more complete, making it a valuable complementary data source in macroecology. Ključne besede: benchmark, bryophyte, fine-grain biodiversity, grassland, GrassPlot Diversity Explorer, lichen, open habitat, Palaearctic, scale dependence, species–area relationship, vascular plant, vegetation plot Objavljeno v DKUM: 07.08.2024; Ogledov: 88; Prenosov: 8
Celotno besedilo (3,53 MB) Gradivo ima več datotek! Več... |
6. Genetska struktura in raznolikost nekaterih tradicionalnih genotipov sliv (Prunus domestica L., Prunus cerasifera Ehrh. in Prunus spinosa L.) : doktorska disertacijaTina Ternjak, 2024, doktorska disertacija Opis: Slovenia has a unique blend of climatic, soil, geographic and historical factors that fostered a rich tradition of plum cultivation and utilization. This study was set up to achieve following objectives: 1. assess the genetic diversity of 124 accessions of the three Prunus species (P. domestica L., P. cerasifera Ehrh., and P. spinosa L.); explore the possible contribution of P. cerasifera and P. spinosa to the ancestry of P. domestica; examine the genetic relationships and variability among the prevalent P. domestica material distributed in Slovenia. A combination of genetic markers, including 11 SSRs (UDP96-005, BPPCT034, EMPAS12, UCD-CH17, EMPAS06, EMPAS11, EMPAS14, BPPCT014, BPPCT025, CPSCT026 and CPPCT006) and three universal cpDNA markers (HK, K1K2 and VL), were chosen alongside flow cytometry. The analysis identified ten cpDNA haplotypes, which were grouped into three clusters using Unweighted Neighbor-Joining (NJ) analysis. All 11 SSR primer pairs exhibited polymorphism, revealing 116 unique genotypes and a total of 328 alleles, indicating considerable diversity with an average of 29.82 alleles per locus. Bayesian analysis distinguished two ancestral populations across all analyzed species. Principal Coordinate Analysis (PCoA) reflected the clustering observed in the Bayesian analysis. When analyzing individual set of P. domestica material, Bayesian analysis also distinguished two ancestral populations across, with PCoA confirming the results of Bayesian analysis. The NJ analysis categorized 71 P. domestica accessions into three clusters with numerous subgroups, reflecting a high genetic diversity. The majority of accessions aligned with traditional pomological groups, such as common prunes, mirabelle plums and greengages.
Genetic diversity parameters were analyzed for the 42 diploid P. cerasifera genotypes. A relatively high diversity levels were found, resulting in 135 alleles, with high average values for alleles per locus (10.38), effective number of alleles (Ne = 5.22), expected heterozygosity (He = 0.77), observed heterozygosity (Ho = 0.64) and PIC value (0.754). In addition, 32 private alleles were found in 20 accessions. Bayesian analysis of the P. cerasifera material revealed three ancestral populations, corroborated by Principal Coordinate Analysis, while an NJ analysis grouped the accessions into three clusters based on the origin of the accession. This study identified valuable local landraces within the P. domestica pool, including traditional prunes or Bluish plums, which are of great genetic interest. Furthermore, the integration of complementary methods facilitated the differentiation of the three species and provided insights into the origin of plum. The findings will be crucial in comprehending the diversity of Slovenian plum germplasm, improving conservation efforts, recovering local genotypes and enriching existing collections of plant genetic resources. Ključne besede: Prunus spp., plum, genetic resources, genetic diversity, genetic structure, cpDNA, SSR Objavljeno v DKUM: 24.07.2024; Ogledov: 160; Prenosov: 53
Celotno besedilo (12,26 MB) |
7. Understorey species distinguish late successional and ancient forests after decades of minimum human intervention : a case study from SloveniaMirjana Šipek, Tim Ravnjak, Nina Šajna, 2023, izvirni znanstveni članek Opis: The main species composition drivers in temperate deciduous forests are environmental conditions, a stand's age and the site history, e.g., the succession stage and past land use, as well as disturbance regime and current management. We compared plant species diversity and composition in late successional and ancient forests, co-occurring on the same small river island applying species accumulation curves and nonmetric multidimensional scaling, respectively. Given the island's geomorphological characteristics, we expected these to be very similar before human intervention in the past. The forests experienced differing disturbance regimes in the past, while over the last 30 years, human intervention has been the same and reduced to a minimum. The ancient forest in this study had two major characteristics defining it as old, mature forest: continuity of presence for more than 200 years and specific composition. The late successional forest experienced major disturbance in the 20th century and was allowed natural regeneration by bordering on the ancient forest, representing a potential species pool, and by decades of minimum human intervention. Our results showed that, even though there was no difference in species richness, we could still detect differences between the forests, particularly in the abundance and species composition of the understorey, among which geophytes had the most indicative importance. To make our results useful on a broader scale, we composed from the literature a species list of plants indicative for ancient forest and tested its application. These results are important for distinguishing between old and mature secondary stands and particularly for identifying old forest stands, which should be conserved and, in the case of fragmented landscapes, included in a network connecting forest fragments. Ključne besede: forest community, successional forest, indicator plants, plant diversity, understorey, geophyte, Slovenia Objavljeno v DKUM: 03.06.2024; Ogledov: 151; Prenosov: 22
Celotno besedilo (1,53 MB) Gradivo ima več datotek! Več... |
8. Contrasting responses of alien and ancient forest indicator plant species to fragmentation process in the temperate lowland forestsMirjana Šipek, Lado Kutnar, Aleksander Marinšek, Nina Šajna, 2022, izvirni znanstveni članek Opis: Fragmentation is one of the major threats to biodiversity. In a fragmented landscape, forest specialists are losing suitable forest habitats with specific site and microclimate conditions, which results in their local extinction. Conversely, the invasion of alien species is facilitated by open forest areas and increased boundaries between forest fragments and adjacent land. We studied the effect of fragmentation in terms of fragment size impact on overall plant species richness and on selected ecologically important groups' richness, composition, and diversity. We surveyed vegetation in the interior of 47 fragments of various sizes and one unfragmented reference forest. Our results reveal that the effect of fragmentation is complex and differs for studied plant groups. Decreasing fragment size negatively affects the overall plant richness and richness of native and ancient forest indicator plants as well as their diversity, while the effect is positive for alien plants. The highest proportion of ancient forest indicator plant species and the lowest proportion of alien plants in the unfragmented forest underline the great conservation value of forest fragments. At the same time, our results reveal that large and diverse forest ecosystems are susceptible to biological invasions as well. Ključne besede: forest fragment, indicator plants, invasion, diversity, habitat modification, habitat conservation Objavljeno v DKUM: 12.07.2023; Ogledov: 313; Prenosov: 48
Celotno besedilo (2,16 MB) Gradivo ima več datotek! Več... |
9. Economic and social diversity in Australia's cotton-producing communitiesTony Sorensen, Bernice Kotey, 2009, izvirni znanstveni članek Opis: Australia’s highly profitable cotton industry is geographically constrained to districts in northern New South Wales and Southern Queensland. However, the rural towns servicing the industry are facing unprecedented stress on account of fierce commercial competition between them, many years of drought during the 2000s, technological innovation in cotton production, the chance occurrence of non-agricultural economic opportunities, and even ethnic composition. Our research focuses on the role of innovative small business in overcoming community stress and we have selected a small sample of six local government areas to examine this link in depth. The selection of a representative sample entailed the classification of cotton communities on the basis of their economic and social profiles and how they had evolved over the inter-census period 2001-06. This analysis surprisingly showed that cotton growing regions are highly differentiated not just at a single point in time (2006), but also in their development trajectories. This considerably complicated the process of sample selection, but also demonstrated the diversity of rural settlement. Ključne besede: diversity of rural settlements, non-agricultural activity, cotton industry, innovative SME’s Objavljeno v DKUM: 19.03.2018; Ogledov: 1103; Prenosov: 107
Celotno besedilo (153,68 KB) Gradivo ima več datotek! Več... |
10. Training in diversity managementSonja Treven, Urška Treven, 2007, izvirni znanstveni članek Opis: The labor force all around the world is becoming increasingly diverse. Thus, organizations that can manage employee diversity effectively gain a competitive advantage. In such organizations diversity training is a necessity. Diversity training helps managers understand and value individual differences and develop strong diagnostic skills. The paper explores various approaches to training, like awareness-based and skill-based diversity training. A special attention to potential problems that may occur in the process of diversity training is given. Ključne besede: diversity management, training, employment, competitiveness, human resources, management Objavljeno v DKUM: 26.07.2017; Ogledov: 1736; Prenosov: 495
Celotno besedilo (304,67 KB) Gradivo ima več datotek! Več... |