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1.
QM-CSA: a novel quantum mechanics-based protocol for evaluation of the carcinogen-scavenging activity of polyphenolic compounds
Veronika Furlan, Jelena Tošović, Urban Bren, 2024, original scientific article

Abstract: In this study, a novel quantum mechanics-based protocol for the evaluation of carcinogenscavenging activity (QM-CSA) is developed. The QM-CSA protocol represents a universal and quantitative approach to evaluate and compare the activation-free energies for alkylation reactions between individual polyphenolic compounds and chemical carcinogens of the epoxy type at physiological conditions by applying two scales: the absolute scale allowing for the comparison with guanine and the relative scale allowing the comparison with glutathione as a reference compound. The devised quantum mechanical methodology was validated by comparing the activation-free energies calculated with 14 DFT functionals in conjunction with two implicit solvation models (SMD and CPCM) and the experimental activation-free energies for reactions between nine investigated chemical carcinogens and guanine. According to the obtained results, the best agreement with experimental data was achieved by applying DFT functionals M11-L and MN12-L in conjunction with the flexible 6-311++G(d,p) basis set and implicit solvation model SMD, and the obtained uncertainties were proven to be similar to the experimental ones. To demonstrate the applicability of the QM-CSA protocol, functionals M11-L, and MN12-L in conjunction with the SMD implicit solvation model were applied to calculate activation-free energies for the reactions of nine investigated chemical carcinogens of the epoxy type with three catechins, namely EGCG, EGC, and (+)-catechin. The order of CSA in this series of catechins in comparison to guanine and glutathione was determined as (+)-catechin > EGC > EGCG. The obtained results, for the first time, demonstrated the evaluation and comparison of CSA in a series of selected catechins with respect to glutathione and guanine. Moreover, the presented results provide valuable insights into the reaction mechanisms and configurations of the corresponding transition states. The novel QM-CSA protocol is also expected to expand the kinetic data for alkylation reactions between various polyphenolic compounds and chemical carcinogens of the epoxy type, which is currently lacking in the scientific literature
Keywords: activation-free energies, chemical carcinogens, polyphenols, guanine, glutathione, quantum mechanical calculations, M11-L and MN12-L DFT functionals
Published in DKUM: 04.09.2024; Views: 39; Downloads: 5
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2.
The comparison of the speed of solving chemistry calculation tasks in the traditional way and with the use of ICT
Brina Dojer, Matjaž Kristl, Andrej Šorgo, 2023, original scientific article

Abstract: Efficiency of time use is a key factor in chemistry calculation tasks, affecting both, personal and professional domains. This study is dedicated to finding the fastest methods for accomplishing chemistry tasks. Our investigation delves into the comparative temporal outlays made by students as they engage three different approaches: using an electronic calculator, a basic calculator app on a smartphone, and a desktop computer calculator. As part of our research, we examine a cohort of 52 Slovenian university students, preservice teachers who were actively enrolled in chemistry and related science programs, spanning the academic years of 2019 and 2022. The results from 2019 show that students can solve the chemistry tasks most quickly using electronic calculator and take the most time to calculate the tasks using smartphones (Δmean = 133 s; ΔSD = 5 s; Δmin = 97 s; Δmax = 131 s). An even larger difference is observed from the 2022 study year (Δmean = 189 s; ΔSD = 129 s; Δmin = 170 s; Δmax = 625 s). In summary, although smartphones are recognised as a multitasking device, replacing traditional single-purpose devices, they have not been able to outperform them.
Keywords: chemistry tasks, chemistry calculations, electronic calculator, smartphones, computer calculators
Published in DKUM: 03.06.2024; Views: 140; Downloads: 20
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The Influence of Increased Moderator Temperature on the Nuclear Characteristics of the NPP Krško
Marjan Kromar, Bojan Kurinčič, 2019, published scientific conference contribution

Abstract: NPP Krško safety analysis has been performed in such a way to allow operation with primary system average coolant temperature - Tavg inside a prescribed range, which constitute the socalled operating window. The Tavg window enables certain flexibility to select an optimum value within the Tavg range taking into account safety, operational and economical considerations. Increase of the reactor coolant temperature in general improves thermodynamic efficiency of the Pressurized Water Reactor (PWR) plant yielding to increase in the electricity production. However, higher temperature causes lower water density in the reactor core altering the neutron moderation and consequently neutron transport in the reactor. This impact on the nuclear core characteristics is investigated for the NPP Krško reactor core.
Keywords: pressurized water reactor, nuclear design calculations, reactor coolant temperature optimization, critical boron concentration, Nuclear Powe Plant Krško
Published in DKUM: 05.12.2023; Views: 332; Downloads: 28
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5.
Use of active elements for providing suitable voltage profiles and prevent overloads in radial distribution networks
Marko Vodenik, Matej Pintarič, Gorazd Štumberger, 2022, original scientific article

Abstract: The article deals with the issue of providing suitable voltage profiles and preventing congestion of network elements in distribution networks. Active network elements and network users’ energy flexibility services are used to provide a suitable voltage profile and prevent congestion in distribution networks. The discussed active network elements include a transformer with on-load tap changer, reactive power compensation devices, energy storage systems, distributed energy resources, and network users’ energy flexibility services, where the active consumers adjust their consumption, production and storage of energy. Based on the Backward Forward Sweep load flow computation method, the case studies are performed for the discussed low voltage distribution network, where the measurement results were available. The case studies for preventing overload of the distribution transformer are performed using a battery energy storage system and network users’ energy flexibility services. The case studies for providing suitable voltage profiles are performed using all listed active elements and a combination of different active elements. In addition, to provide suitable voltage profiles, the existing conductors are replaced with conductors of a larger cross-section. Technically acceptable solutions that can provide a suitable voltage profile and prevent the overloading of network elements in the most demanding operating conditions are presented in this article.
Keywords: voltage profile, radial distribution network, load flow calculations, active network elements, energy flexibility
Published in DKUM: 30.10.2023; Views: 537; Downloads: 9
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6.
Ensemble Docking Coupled to Linear Interaction Energy Calculations for Identification of Coronavirus Main Protease (3CLpro) Non-Covalent Small-Molecule Inhibitors
Marko Jukič, Dušanka Janežič, Urban Bren, 2020, original scientific article

Abstract: SARS-CoV-2, or severe acute respiratory syndrome coronavirus 2, represents a new strain of Coronaviridae. In the closing 2019 to early 2020 months, the virus caused a global pandemic of COVID-19 disease. We performed a virtual screening study in order to identify potential inhibitors of the SARS-CoV-2 main viral protease (3CLpro or Mpro). For this purpose, we developed a novel approach using ensemble docking high-throughput virtual screening directly coupled with subsequent Linear Interaction Energy (LIE) calculations to maximize the conformational space sampling and to assess the binding affinity of identified inhibitors. A large database of small commercial compounds was prepared, and top-scoring hits were identified with two compounds singled out, namely 1-[(R)-2-(1,3-benzimidazol-2-yl)-1-pyrrolidinyl]-2-(4-methyl-1,4-diazepan-1-yl)-1-ethanone and [({(S)-1-[(1H-indol-2-yl)methyl]-3-pyrrolidinyl}methyl)amino](5-methyl-2H-pyrazol-3-yl)formaldehyde. Moreover, we obtained a favorable binding free energy of the identified compounds, and using contact analysis we confirmed their stable binding modes in the 3CLpro active site. These compounds will facilitate further 3CLpro inhibitor design.
Keywords: COVID-19, SARS-CoV-2, Mpro, 3CLpro, 3C-like protease, virtual screening, inhibitors, in silico drug design, free-energy calculations
Published in DKUM: 10.12.2020; Views: 1252; Downloads: 183
.pdf Full text (2,99 MB)

7.
Solution of the problem of critical path’s finding in Excel on the basis of reducing it to ordinary transportation task
Mimo Drašković, Ludmila Malyaretz, Oleksandr Dorokhov, 2016, independent scientific component part or a chapter in a monograph

Abstract: The problem of determining the critical path for the scheduling tasks has been considered. An original technique for practical calculations using the available Solver add-on in Excel has been described. The proposed approach is based on reducing the task to solving the ordinary transportation problem, in particular to the problem of finding the longest path. Examples of solutions with the test input data and corresponding screenshots are given. The practical steps of the user’s action in the process of direct solution in Excel are consistently described. The analysis of the results of the proposed method has been performed and presented. It is established that presented method for calculating the critical path requires minimal efforts from the users, regardless of the dimension of the tasks.
Keywords: task scheduling, transportation tasks, calculations, critical path, Excel, Solver, software tools
Published in DKUM: 09.05.2018; Views: 1141; Downloads: 94
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8.
Testing the sustainability of growth of the LJSEX in the January 2000 to May 2010 period
Aleš Ahčan, 2011, original scientific article

Abstract: In this paper we analyse the behaviour of the LJSEX, the main index of the Ljubljana Stock Exchange, in the period from January 2000 till May 2010. More precisely, we test for the presence of bubbles and antibubbles and try to determine whether or not a bubble could have been predicted (both the formation and the date of the bubble burst). Second, we also employ techniques used to model antibubbles to forecast the future behaviour of the LJSE index. Besides modelling index dynamics for the aforementioned period, we also seek to determine the factors that led to the bubble forming and later bursting. We find that the bubble could have been forecasted at least several months in advance. On the other hand, a very precise date of the crash seems harder to identify. By more closely analysing the interplay between interest rates, credit activity and the LJSEX, we conclude that there is a clear connection between decreasing interest rates, increased credit activity and the formation of a stock bubble. If there is a clear correlation between the early phase of a bubble and increased credit activity of the banking sector, the link between the end of the bubble and the restriction of credit activity is less pronounced. By fitting the extended antibubble model from (Johansen 1999a) we obtain the values of parameters that give us some indication of the future behaviour of the LJSEX. Based on these results we conclude that in the next few years we are likely to experience a period of increased volatility with no clear increasing or decreasing growth pattern.
Keywords: exchange, interest rate, business mathematics, calculations, models
Published in DKUM: 22.01.2018; Views: 1237; Downloads: 368
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