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1.
Critical transitions in pancreatic islets
Dean Korošak, Sandra Postić, Andraž Stožer, Boštjan Podobnik, Marjan Rupnik, 2025, izvirni znanstveni članek

Opis: Calcium signals in pancreatic � cell collectives show a sharp transition from uncorrelated to correlated state resembling a phase transition as the slowly increasing glucose concentration crosses the tipping point. However, the exact nature or the order of this phase transition is not well understood. Using confocal microscopy to record the collective calcium activation of � cells in an intact islet under changing glucose concentration in an increasing and then decreasing way, we first show that in, addition to the sharp transition, the coordinated calcium response exhibits a hysteresis indicating a critical, first-order transition. A network model of � cells combining link selection and coordination mechanisms capture the observed hysteresis loop and the critical nature of the transition. Our results point towards an understanding of the role of islets as tipping elements in the pancreas that, interconnected by perfusion, diffusion, and innervation, cause the tipping dynamics and abrupt insulin release.
Ključne besede: cellular organization, physiology & dynamics, phase transitions in biological systems, complex networks, endocrine system, optical microscopy
Objavljeno v DKUM: 19.03.2025; Ogledov: 0; Prenosov: 0
.pdf Celotno besedilo (1,90 MB)
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2.
Impact of inter-city interactions on disease scaling
Nathalia A. Loureiro, Camilo R. Neto, Jack Sutton, Matjaž Perc, Haroldo V. Ribeiro, 2025, izvirni znanstveni članek

Opis: Inter-city interactions are critical for the transmission of infectious diseases, yet their effects on the scaling of disease cases remain largely underexplored. Here, we use the commuting network as a proxy for inter-city interactions, integrating it with a general scaling framework to describe the incidence of seven infectious diseases across Brazilian cities as a function of population size and the number of commuters. Our models significantly outperform traditional urban scaling approaches, revealing that the relationship between disease cases and a combination of population and commuters varies across diseases and is influenced by both factors. Although most cities exhibit a less-than-proportional increase in disease cases with changes in population and commuters, more-than-proportional responses are also observed across all diseases. Notably, in some small and isolated cities, proportional rises in population and commuters correlate with a reduction in disease cases. These findings suggest that such towns may experience improved health outcomes and socioeconomic conditions as they grow and become more connected. However, as growth and connectivity continue, these gains diminish, eventually giving way to challenges typical of larger urban areas - such as socioeconomic inequality and overcrowding - that facilitate the spread of infectious diseases. Our study underscores the interconnected roles of population size and commuter dynamics in disease incidence while highlighting that changes in population size exert a greater influence on disease cases than variations in the number of commuters.
Ključne besede: complex networks, statistical physics, interactions between cities, disease scaling, social physics
Objavljeno v DKUM: 09.01.2025; Ogledov: 0; Prenosov: 4
.pdf Celotno besedilo (3,94 MB)
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3.
Segregation dynamics driven by network leaders
Wen-Xuan Wang, Yuhao Feng, Siru Chen, Wenzhe Xu, Xinjian Zhuo, Huijia Li, Matjaž Perc, 2022, izvirni znanstveni članek

Opis: Network segregation - a critical problem in real-life networks - can reveal the emergence of conflicts or signal an impending collapse of the whole system. However, the strong heterogeneity of such networks and the various definitions for key nodes continue to pose challenges that limit our ability to foresee segregation and to determine the main drivers behind it. In this paper, we show that a multi-agent leader-follower consensus system can be utilized to define a new index, named leadership, to identify key leaders in real-life networks. And then, this paper explores the emergence of network segregation that is driven by these leaders based on the removal or the rewiring of the relations between different nodes in agreement with their contribution distance. We finally show that the observed leaders-driven segregation dynamics reveals the dynamics of heterogeneous attributes that critically influence network structure and its segregation. Thus, this paper provides a theoretical method to study complex social interactions and their roles in network segregation, which ultimately leads to a closed-form explanation for the emergence of imbalanced network structure from an evolutionary perspective.
Ključne besede: complex networks, network segregation, multi-agent leader–follower consensus system, key leaders identification, leader, segregation, social physics
Objavljeno v DKUM: 08.07.2024; Ogledov: 122; Prenosov: 22
.pdf Celotno besedilo (3,18 MB)
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4.
Link prediction in multiplex online social networks
Mahdi Jalili, Yasin Orouskhani, Milad Asgari, Nazanin Alipourfard, Matjaž Perc, 2017, izvirni znanstveni članek

Opis: Online social networks play a major role in modern societies, and they have shaped the way social relationships evolve. Link prediction in social networks has many potential applications such as recommending new items to users, friendship suggestion and discovering spurious connections. Many real social networks evolve the connections in multiple layers (e.g. multiple social networking platforms). In this article, we study the link prediction problem in multiplex networks. As an example, we consider a multiplex network of Twitter (as a microblogging service) and Foursquare (as a location-based social network). We consider social networks of the same users in these two platforms and develop a meta-path-based algorithm for predicting the links. The connectivity information of the two layers is used to predict the links in Foursquare network. Three classical classifiers (naive Bayes, support vector machines (SVM) and K-nearest neighbour) are used for the classification task. Although the networks are not highly correlated in the layers, our experiments show that including the cross-layer information significantly improves the prediction performance. The SVM classifier results in the best performance with an average accuracy of 89%.
Ključne besede: social networks, complex networks, signed networks, link prediction, machine learning
Objavljeno v DKUM: 08.08.2017; Ogledov: 1598; Prenosov: 471
.pdf Celotno besedilo (940,17 KB)
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5.
Quantifying soil complexity using network models of soil porous structure
Marko Samec, A. Santiago, J. P. Cardenas, R. M. Benito, A. M. Tarquis, Sacha Jon Mooney, Dean Korošak, 2013, izvirni znanstveni članek

Opis: This paper describes an investigation into the properties of spatially embedded complex networks representing the porous architecture of soil systems. We suggest an approach to quantify the complexity of soil pore structure based on the node-node link correlation properties of the networks. We show that the complexity depends on the strength of spatial embedding of the network and that this is related to the transition from a non-compact to compact phase of the network.
Ključne besede: soil complexity, soil pore networks, complex systems
Objavljeno v DKUM: 21.07.2017; Ogledov: 1476; Prenosov: 337
.pdf Celotno besedilo (3,85 MB)
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6.
Pacemaker-driven stochastic resonance on diffusive and complex networks of bistable oscillators
Matjaž Perc, Marko Gosak, 2008, izvirni znanstveni članek

Opis: We study the phenomenon of stochastic resonance on diffusive, small-world and scale-free networks consisting of bistable overdamped oscillators. Important thereby is the fact that the external subthreshold periodic forcing is introduced only to a single oscillator of the network. Hence, the forcing acts as a pacemaker trying to impose its rhythm on the whole network through the unit to which it is introduced. Without the addition of additive spatiotemporal noise, however, the whole network, including the unit that is directly exposed to the pacemaker, remains trapped forever in one of the two stable steady states of the local dynamics. We show that the correlation between the frequency of subthreshold pacemaker activity and the response of the network is resonantly dependent on the intensity of additive noise. The reported pacemaker-driven stochastic resonance depends most significantly on the coupling strength and the underlying network structure. Namely, the outreach of the pacemaker obeys the classic diffusion law in the case of nearest-neighbor interactions, thus being proportional to the square root of the coupling strength, whereas it becomes superdiffusive by an appropriate small-world or scale-free topology of the interaction network. In particular, the scale-free topology is identified as being optimal for the dissemination of localized rhythmic activity across the whole network. Also, we show that the ratio between the clustering coefficient and the characteristic path length is the crucial quantity defining the ability of a small-world network to facilitate the outreach of the pacemaker-emitted subthreshold rhythm. We additionally confirm these findings by using the FitzHugh-Nagumo excitable system as an alternative to the bistable overdamped oscillator.
Ključne besede: noise, bistable dynamics, stochastic simulations, complex networks
Objavljeno v DKUM: 03.07.2017; Ogledov: 1498; Prenosov: 474
.pdf Celotno besedilo (2,18 MB)
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7.
Fast random rewiring and strong connectivity impair subthreshold signal detection in excitable networks
Vladislav Volman, Matjaž Perc, 2010, izvirni znanstveni članek

Opis: We study dynamical responses in locally paced networks consisting of diffusively coupled excitable units with dynamically adjusted connectivity. It is shown that for weak subthreshold pacing, excessive or strong connectivity impairs the reliable response of a network to the stimulus. Fast random dynamic rewiring of the network also acts detrimentally on signal detection by enforcing a faster relaxation upon the paced unit. Our results indicate that efficient signal processing on excitable complex networks requires tight correspondence between the dynamics of connectivity and the dynamical processes taking place on the network. This, in turn, suggests the existence of 'function-follows-form' principles for systems described within this framework.
Ključne besede: neuronal dynamics, complex networks, coevolution, cognition
Objavljeno v DKUM: 03.07.2017; Ogledov: 1321; Prenosov: 356
.pdf Celotno besedilo (1,36 MB)

8.
Evolution of cooperation on scale-free networks subject to error and attack
Matjaž Perc, 2009, izvirni znanstveni članek

Opis: We study the evolution of cooperation in the prisoner's dilemma and the snowdrift game on scale-free networks that are subjected to intentional and random removal of vertices. We show that, irrespective of the game type, cooperation on scale-free networks is extremely robust against random deletionof vertices, but declines quickly if vertices with the maximal degree are targeted. In particular, attack tolerance is lowest if the temptation to defect is largest, whereby a small fraction of removed vertices suffices to decimate cooperators. The decline of cooperation can be directly linked to the decrease of heterogeneity of scale-free networks that sets in due to the removal of high degree vertices. We conclude that the evolution of cooperation is characterized by similar attack and error tolerance as was previously reported for information readiness and spread of viruses on scale-free networks.
Ključne besede: evolutionary game theory, social dilemma, spatial games, complex networks
Objavljeno v DKUM: 30.06.2017; Ogledov: 1622; Prenosov: 382
.pdf Celotno besedilo (684,60 KB)
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9.
Chimera states in uncoupled neurons induced by a multilayer structure
Soumen Majhi, Matjaž Perc, Dibakar Ghosh, 2016, izvirni znanstveni članek

Opis: Spatial coexistence of coherent and incoherent dynamics in network of coupled oscillators is called a chimera state. We study such chimera states in a network of neurons without any direct interactions but connected through another medium of neurons, forming a multilayer structure. The upper layer is thus made up of uncoupled neurons and the lower layer plays the role of a medium through which the neurons in the upper layer share information among each other. Hindmarsh-Rose neurons with square wave bursting dynamics are considered as nodes in both layers. In addition, we also discuss the existence of chimera states in presence of inter layer heterogeneity. The neurons in the bottom layer are globally connected through electrical synapses, while across the two layers chemical synapses are formed. According to our research, the competing effects of these two types of synapses can lead to chimera states in the upper layer of uncoupled neurons. Remarkably, we find a density-dependent threshold for the emergence of chimera states in uncoupled neurons, similar to the quorum sensing transition to a synchronized state. Finally, we examine the impact of both homogeneous and heterogeneous inter-layer information transmission delays on the observed chimera states over a wide parameter space.
Ključne besede: complex networks, computational biophysics, nonlinear phenomena, statistical physics
Objavljeno v DKUM: 23.06.2017; Ogledov: 1207; Prenosov: 446
.pdf Celotno besedilo (1,40 MB)
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10.
Evolution of interactions and cooperation in the spatial prisoner's dilemma game
Chunyan Zhang, Jianlei Zhang, Guangming Xie, Long Wang, Matjaž Perc, 2011, izvirni znanstveni članek

Opis: We study the evolution of cooperation in the spatial prisoner's dilemma game where players are allowed to establish new interactions with others. By employing a simple coevolutionary rule entailing only two crucial parameters, we find that different selection criteria for the new interaction partners as well as their number vitally affect the outcome of the game. The resolution of the social dilemma is most probable if the selection favors more successful players and if their maximally attainable number is restricted. While the preferential selection of the best players promotes cooperation irrespective of game parametrization, the optimal number of new interactions depends somewhat on the temptation to defect. Our findings reveal that the "making of new friends" may be an important activity for the successful evolution of cooperation, but also that partners must be selected carefully and their number limited.
Ključne besede: evolutionary games, prisoner's dilemma, coevolution, complex networks, friendship
Objavljeno v DKUM: 19.06.2017; Ogledov: 1185; Prenosov: 374
.pdf Celotno besedilo (309,95 KB)
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