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Association of circulating tumor cells, megakaryocytes and a high immune-inflammatory environment in metastatic breast cancer
Cvetka Grašič-Kuhar, Silvester Jernej, Marina Mencinger, Tanja Ovčariček, Maja Čemažar, Simona Miceska, Živa Modic, Anamarija Kuhar, Tanja Jesenko, Veronika Kloboves-Prevodnik, 2023, original scientific article

Abstract: Liquid biopsy is becoming an important source of new biomarkers during the treatment of metastatic cancer patients. Using size-based microfluid technology, we isolated circulating tumor cells (CTCs) from metastatic breast cancer patients to evaluate their presence and cluster formation, as well as the presence of megakaryocytes and immune-inflammatory blood cells, and to correlate their presence with clinicopathological data and overall survival (OS). In total, 59 patients (median age 60.4 years) were included in the study: 62.7% luminal A/B-like, 20.3% HER2-positive, and 17% triple-negative. Our results showed that at least one CTC was present in 79.7% and ≥5 CTCs in 35.2% of the patients. CTC clusters were present in patients with ≥5 CTCs only (in 19.2% of them), and megakaryocytes were present in 52% of all patients. The presence of CTC clusters and megakaryocytes was positively associated with the CTC count. Patients with low pan-inflammatory value (PIV), low systemic immune-inflammatory index (SII), and low relative change from baseline (ΔPIV%, ΔSII%) were associated with significantly higher OS than their counterparts. ΔPIV%, the presence of infection in the last month, and a long duration of metastatic disease were identified as independent prognostic factors for OS. The interplay of CTCs, CTC clusters, megakaryocytes, and PIV needs to be further explored.
Keywords: breast cancer, circulating tumor cell, cluster, megakaryocyte, pan-inflammatory value, overall survival
Published in DKUM: 19.04.2024; Views: 159; Downloads: 8
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Directions for the sustainability of innovative clustering in a country
Vito Bobek, Vladislav Streltsov, Tatjana Horvat, 2023, original scientific article

Abstract: This paper presents potential improvements through utilizing the cyclical nature of clusters by human capital, technology, policies, and management. A historical review of the formation and sustainable development of clusters in the US, Europe, Japan, China, and other regions is carried out to achieve this. The aim was to identify and assess the prominent occurrence cases, the central institutional actors, the indicators of their innovative activity, and the schematics of successful cluster management. The theory section covers current classification methods and typology of innovation-territorial economic associations. Consequently, a regression analysis model is produced to identify the potential dominant success factors in implementing the innovation policy of the most successful innovative clusters. Comments on the influence of these predictors on the competitiveness and level of innovative development of the 50 inspected countries follow. As a result of qualitative and quantitative analysis, an overview of the best world practice, the new vision, and its priorities are proposed to improve the efficiency at the level of management structures of innovation clusters.
Keywords: cluster, cluster policy, state policy, regression analysis, institutions, innovation, R&D
Published in DKUM: 09.04.2024; Views: 227; Downloads: 121
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Acetan and acetan-like polysaccharides: genetics, biosynthesis, structure, and viscoelasticity
Janja Trček, Iztok Dogša, Tomaž Accetto, David Stopar, 2021, review article

Abstract: Bacteria produce a variety of multifunctional polysaccharides, including structural, intracellular, and extracellular polysaccharides. They are attractive for the industrial sector due to their natural origin, sustainability, biodegradability, low toxicity, stability, unique viscoelastic properties, stable cost, and supply. When incorporated into different matrices, they may control emulsification, stabilization, crystallization, water release, and encapsulation. Acetan is an important extracellular water-soluble polysaccharide produced mainly by bacterial species of the genera Komagataeibacter and Acetobacter. Since its original description in Komagataeibacter xylinus, acetan-like polysaccharides have also been described in other species of acetic acid bacteria. Our knowledge on chemical composition of different acetan-like polysaccharides, their viscoelasticity, and the genetic basis for their production has expanded during the last years. Here, we review data on acetan biosynthesis, its molecular structure, genetic organization, and mechanical properties. In addition, we have performed an extended bioinformatic analysis on acetan-like polysaccharide genetic clusters in the genomes of Komagataeibacter and Acetobacter species. The analysis revealed for the first time a second acetan-like polysaccharide genetic cluster, that is widespread in both genera. All species of the Komagataeibacter possess at least one acetan genetic cluster, while it is present in only one third of the Acetobacter species surveyed.
Keywords: extracellular polysaccharide, acetan, acetan genetic cluster, acetan synthesis, acetan viscoelasticity, applications of acetan, Komagataeibacter, Acetobacter
Published in DKUM: 02.09.2022; Views: 561; Downloads: 9
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Multivariate data analysis of natural mineral waters
Katja Šnuderl, Marjana Simonič, Jan Mocak, Darinka Brodnjak-Vončina, 2007, original scientific article

Abstract: Fifty samples of natural mineral waters from springs in Slovenia, Hungary, Germany, Czech Republic and further countries of former Yugoslavia have been analysed. The mass concentration of cations ($Na^+$, $K^+$, $Ca^{2+}$, $Mg^{2+}$, $Fe^{2+}$, $Mn^{2+}$, $NH^+_4$) and anions ($F^-$, $Cl^-$, $I^-$, $NO^-_3$, $SO_4^{2-}$, $HCO_3^-$), the spring temperature, pH, conductivity and carbon dioxide mass concentration have been measured using standard analytical methods. Appropriate statistical methods and different chemometric tools were used to evaluate the obtained data, namely, (i) descriptive statistics, (ii) principal component analysis (PCA), (iii) cluster analysis, and (iv) linear discriminant analysis (LDA). It was confirmed that Slovenian natural mineral water samples differ most from the German ones but are relatively similar to the Czech and Hungarian ones. Water samples from Hungary are similar to waters from the eastern part of Slovenia.
Keywords: natural mineral water, ion determination, principal component analysis, cluster analysis, linear discriminant analysis
Published in DKUM: 21.12.2015; Views: 1775; Downloads: 94
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Regression analysis of variables describing poultry meat supply in European countries
Miro Simonič, Ksenija Dumičić, Gabrijel Devetak, 2012, original scientific article

Abstract: In this paper, based on the analysis of official FAOSTAT and EUROSTAT data on poultry meat for 38 European countries for years 2007 and 2009, two hypotheses were examined. Firstly, considering four clustering variables on poultry meat, i.e. production, export and import in kg/capita, as well as the producer price in US $/t, using descriptive exploratory and cluster analysis, the hypothesis that the clusters of countries may be recognized was confirmed. As a result six clusters of similar countries were distinguished. Secondly, based on multiple regression analysis, this paper proofs that there exists the statistically significant relationship of poultry meat production on export and import of that kind of meat, all measured in kg/capita. There is also a high correlation between production, as a dependent, and each of two independent variables.
Keywords: poultry meat, marketing strategy, cluster analysis, correlation, multiple regression
Published in DKUM: 10.07.2015; Views: 1486; Downloads: 400
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